PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G269400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 249aa    MW: 27543.9 Da    PI: 8.7882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G269400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-055880123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C k F++   L  H+++H
  Glyma.13G269400.1.p 58 YTCSFCRKEFRSAQALGGHMNVH 80
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.89E-75585No hitNo description
Gene3DG3DSA:3.30.160.603.1E-45682IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.1E-65881IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4065885IPR007087Zinc finger, C2H2
SMARTSM003550.00355880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MKDYTHHHSC VNNKNPTTTK EFSHVVANCY NNNNIHSNNN IADQNDYVNG FPWPPRSYTC  60
SFCRKEFRSA QALGGHMNVH RRDRARLRQS SPPTHHEVHQ GQAQGPMLNL NLNPNSNSSL  120
SLLPPPPSSS ATTTTTLKPV FTCTLPLFVS PTPPSPSSEL KRWVVVDGIA LNPLSKKTST  180
PEHYSKSKIP ESLSSAGVGE YHHDQAFARE DGCKVLKKGG DILRMDLEIG LPRGYDLDLE  240
LRLGTTYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-135380229superman protein
2l1o_A5e-135380229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G269400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362211e-66AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541817.10.0transcriptional regulator SUPERMAN
RefseqXP_028187223.10.0transcriptional regulator SUPERMAN-like
TrEMBLA0A445IAS90.0A0A445IAS9_GLYSO; Transcriptional regulator SUPERMAN
STRINGGLYMA13G34450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-29C2H2 family protein