PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G216900.1.p
Common NameGLYMA_13G216900, LOC102664746
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 323aa    MW: 35741.2 Da    PI: 6.4299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G216900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.7e-164896355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIr p +   + r++lg+f+ta+eAa a+++a+++++g
  Glyma.13G216900.1.p 48 FLGVRRRP-WGRYAAEIRNPLT---KERHWLGTFDTAQEAALAYDRAALSMKG 96
                         56******.**********743...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-2947110IPR001471AP2/ERF domain
CDDcd000183.60E-2747103No hitNo description
PROSITE profilePS5103220.19247104IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1948105IPR016177DNA-binding domain
PRINTSPR003671.1E-74859IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2748104IPR001471AP2/ERF domain
PfamPF008478.4E-115096IPR001471AP2/ERF domain
PRINTSPR003671.1E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSTSRTSDAS LKGYESNQTQ MNLSLLQRNM SPSGERRGRG KQAEPGRFLG VRRRPWGRYA  60
AEIRNPLTKE RHWLGTFDTA QEAALAYDRA ALSMKGCQAR TNFIYSKDTN TNIFHNALTP  120
MNTQPLLPPS HNTHNTQPTN QSGLSHHLGA ISSHIENPSD MSAYGSPQDD NFFFSNDSNS  180
GYLECIVQDN CFRKSNASAS SHDLTIGHVN SNSMHVQPHF DTTQEALNMQ TTVTSNYADI  240
SYPSQGLWNN QQSWDCSSNE LAAMFKNPSR AEEGYMCMNA LMYPFTDSSS YGFMTQAEAV  300
SSTTFSPSLP PFGDADLGYS PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2038113581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G216900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-141AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595398.10.0ethylene-responsive transcription factor ERF086
RefseqXP_028187395.10.0ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q28e-52ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A445I8300.0A0A445I830_GLYSO; Ethylene-responsive transcription factor ERF086
TrEMBLK7M1260.0K7M126_SOYBN; Uncharacterized protein
STRINGGLYMA13G28810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.14e-49ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]