PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G204400.3.p
Common NameGLYMA_13G204400, LOC100795896
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 438aa    MW: 48273.3 Da    PI: 8.6106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G204400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.7e-13371416655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l Pk+    +k  s a++L +AveYIk+Lq
  Glyma.13G204400.3.p 371 SIAERERRTRISARIKKLQDLFPKS----DKQTSTADMLDLAVEYIKDLQ 416
                          689*********************9....788*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14368428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-11369420No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13370426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-10371416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-11371421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSIVYSHAVK YSRGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LVNNNNNNNG  60
YVNGESFRSE HNHHHHQQQQ QQHYPPSTSS EMENMLAKLI SSNNSEPLQM KEEAGDSVSQ  120
PPQQHNGYSY GSSPQMMYQT QQIQGLPIPN GSLGASGSAF DGSFSAVNSL ASQNSTQPKM  180
GASTNCNNLI RQKSSPAGFF SNYSVDNALR DVASFRGCDV SNGQAITSSS GLHGTLNFSS  240
RPSSCSTRMP QIAENGNEDV EANCVESRNL RNDNINNTKC YMPSFTTDFW DGSAFSASRT  300
ASNSGEISFS TSKAMDIQDE DFGYQKVGLT HHLSLPGSSS RMATMEKLYQ IQGSVPCKIR  360
AKRGFATHPR SIAERERRTR ISARIKKLQD LFPKSDKQTS TADMLDLAVE YIKDLQKQVK  420
ILRDTRAKCT CTSNQKH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.50830.0flower| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991790.0BT099179.1 Soybean clone JCVI-FLGm-26J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594420.10.0PREDICTED: transcription factor bHLH130 isoform X2
TrEMBLK7M0V40.0K7M0V4_SOYBN; Uncharacterized protein
STRINGGLYMA13G27455.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-48bHLH family protein