PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G130100.1.p
Common NameGLYMA_13G130100, LOC100788491
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 510aa    MW: 56361.9 Da    PI: 5.9854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G130100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44e-16300346455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Glyma.13G130100.1.p 300 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 346
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-17299350No hitNo description
SuperFamilySSF474596.8E-21299374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13300346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-21300355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MNHCVPDFET QMDDDLEFSI PVSKKPSTQN DEIMELLWQN GQVVMQSQNQ RPFRKPPQPP  60
EANGGDGAIS AREIRSSEAE NYNNSQHLFM QEDEMAAWLH YPIHEDPPPF DHHDFGADIF  120
YPPPNATASQ NRGSAAVQSS FRTTELWHPA PRPPIPPPRR PEHAPSRIHN FAHFTKHGNA  180
SSSSKAAAAA QPTVVDSCET PVATAEHAET GRARAAAGKT AVSDGGRETA TCDVTVTSSP  240
GDSSGSAEPV EREPMADRKR KGREHEESEF QSEDVDFESP EAKKQVHGST STKRSRAAEV  300
HNLSERRRRD RINEKMKALQ ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGYGMVP  360
MMFPGIQQYM PPMGMGIGMG MGMEMGMGMN RPVMPFTNML ASSTLPAATA AVHLGPRFPM  420
PPFHMPHVAA PDSSRMQGAN HPDNNMLNSL GTLDPDQSRI PNFTDPYQQY LGLQQAQLQL  480
MQTMNQQNVS KPSSSRGQEN PEKHQSDET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.230090.0cotyledon| hypocotyl| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594070.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLK7LZG00.0K7LZG0_SOYBN; Uncharacterized protein
STRINGGLYMA13G19250.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-51phytochrome interacting factor 3-like 5