PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G120700.1.p
Common NameGLYMA_13G120700, LOC100782107
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 507aa    MW: 55276.5 Da    PI: 5.5408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G120700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11357403455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Glyma.13G120700.1.p 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 403
                          799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-4551227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-17356423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-13356407No hitNo description
Gene3DG3DSA:4.10.280.102.2E-17357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.80E-4437504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MMGEKFCVNE EDKGVLESVL GAEAVAFFIS ALSNNVFSGV VAPSASTDPG LRQRLCQLVE  60
GSKWNYAVFW QVAVLKSGGS ALVWGDGHCS DPKGERNGVG KEDEQEVRKN VLQKLDACFG  120
GSVSKEANYA RLDRVSDLLM FYLSSMCYIF GFDSPCGPGS SFKSGKLIWA SDAAGCLNQL  180
ESRSFMGKLA GLQTVVFVPL KSGVVELGSL EMVPEEHGVV EMVRTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHAYGNSS NGTLGVSNEG  300
KMFPQLNQMM AGNFNAQGSG VPCLDLGNED SSSIHADERK PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITFIT DLQMKIKVLE AEKNMIHNQD  420
QKLSLPDMDF QEREDETVVT VRCPLDIHPV SNVVKTFKEH QIVAQDSSVS TTDDKIIHTF  480
SIRTEGGETA AIQLKEKLEA SLSKNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-18512279192Transcription factor MYC3
4rqw_B5e-18512279192Transcription factor MYC3
4rs9_A5e-18512279192Transcription factor MYC3
4yz6_A5e-18512279192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610390.0flower| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0156800.0AP015680.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0636, complete sequence, cultivar: Shumari.
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594010.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLK7LZ930.0K7LZ93_SOYBN; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-157bHLH family protein