PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G105400.1.p
Common NameGLYMA_13G105400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 511aa    MW: 57498.2 Da    PI: 7.1268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-11314360354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          + h + ErrRR+++N++f+ Lr llP+      +K  K +iL+ A + ++sL
  Glyma.13G105400.1.p 314 QHHMITERRRREKLNESFQALRALLPPG-----TKKAKGTILTTAKDTMRSL 360
                          67999*********************97.....7999999999999888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.738311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13311380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-14312380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-10313365No hitNo description
PfamPF000101.4E-8314360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDGVFTLPKA ARADFFRSLV QSFGCTYVCL WQYDSNLSNL FFFDGYCDVT NNQPSSYLGS  60
VAERLFHQYR ALTFDVNHEC VPGVAFRNQL PYIELQLLDL LRLTSTEIQT QFFQIAVFMG  120
CKNGEIELGF SNISQVIKKT ILPSSSFCFM SLSTGSPDQC SSSLLLSSIP GTSQSHFPQT  180
LPTQTHQQQS IQEIDLAPVI PSYFPTPDGE HEAIVRALMS VMSPLSSSSS TSQQHQPRQI  240
LPNYTSIVHP GATAFNTYRS DTMNPNITPY MGSNFRRQSP QNRSFAFFTN LNLMRMRELV  300
SQPASRPIST QHQQHHMITE RRRREKLNES FQALRALLPP GTKKAKGTIL TTAKDTMRSL  360
MDEIEKINLR NQQLMAVLSA KETTVSATST EENKAKPSSS SSNERLNVLV SAVLESSSLS  420
EERMVDVQVT LRGESSRVDV LIRLLEFLER VQNVNLVSMY ANNHIIGGTT INQLTFRLRI  480
IEGNEWDEHA LEEAVRRVVA DTIQWKPLDQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319324ERRRRE
2320325RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G105400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595336.10.0putative transcription factor bHLH041
TrEMBLK7LYW30.0K7LYW3_SOYBN; Uncharacterized protein
STRINGGLYMA13G16480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-45bHLH family protein