PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G096900.1.p
Common NameGLYMA_13G096900, LOC100797828
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 529aa    MW: 56967.3 Da    PI: 7.9813
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G096900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14146205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Glyma.13G096900.1.p 146 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 205
                          57*******************666664477446**********99*************98 PP

2AP247.25.6e-15248299155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.13G096900.1.p 248 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 299
                          57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-17146215IPR016177DNA-binding domain
CDDcd000187.37E-22146215No hitNo description
PfamPF008479.3E-12146205IPR001471AP2/ERF domain
PROSITE profilePS5103218.927147213IPR001471AP2/ERF domain
SMARTSM003806.1E-29147219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15147214IPR001471AP2/ERF domain
PRINTSPR003672.2E-6148159IPR001471AP2/ERF domain
CDDcd000185.80E-25248309No hitNo description
SuperFamilySSF541717.19E-18248309IPR016177DNA-binding domain
PfamPF008476.9E-10248299IPR001471AP2/ERF domain
SMARTSM003801.5E-33249313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18249308IPR001471AP2/ERF domain
PROSITE profilePS5103219.045249307IPR001471AP2/ERF domain
PRINTSPR003672.2E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDSCSSPPNN NSLAFSLSNH FPNPSSSPLS LFHSFTYPSL SLTGSHTADA PPEPIAGGGA  60
TNLSIFTGAP KFEDFLGGSS ATATATTCAP PQLPQFSTDN NNHLYDSELK TTIAACFPRA  120
FAAEPTTEPQ KPSPKKTVDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ  180
VYLGGYDKED KAARAYDLAA LKYWGPTTTT NFPISNYEKE LEEMKNMTRQ EFVASLRRKS  240
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL  300
NAVTNFDMSR YDVKSIANST LPIGGLSGKN KNSTDSASES KSHEASRSDE RDPSAASSVT  360
FASQQQPSSS TLSFAIPIKQ DPSDYWSILG YHNSPLDNTG IRNTTSVTAT SFPSSNNGTT  420
SSLTPFHMEF SNAPTSTGSD NDAAFFSGGG IFVQQQSGHG NGHGSGSSGS SSSSLSCSIP  480
FATPIFSLNS NTSYENSAGY GNWIGPTLHT FQSHAKPSLF QTPIFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.531110.0cotyledon| somatic embryo| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541472.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-148AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1LVQ80.0I1LVQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G00950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-141AINTEGUMENTA-like 5