PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G081600.1.p
Common NameGLYMA_13G081600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 265aa    MW: 28678.8 Da    PI: 5.0421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G081600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-184191155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Glyma.13G081600.1.p 41 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 91
                         59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-1842101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-2942102IPR001471AP2/ERF domain
SMARTSM003809.6E-3342106IPR001471AP2/ERF domain
PfamPF008472.5E-114291IPR001471AP2/ERF domain
PROSITE profilePS5103221.93142100IPR001471AP2/ERF domain
PRINTSPR003676.7E-94354IPR001471AP2/ERF domain
CDDcd000189.67E-1743102No hitNo description
PRINTSPR003676.7E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVKSENKIQR EQPSSSKLMR PLSSSSSSSS SSSDNNNKNK KKYKGVRMRS WGSWVSEIRA  60
PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GSSATNLNFP SSSSSLQHYI IPQDTSMMSP  120
KSIQRVAAAA ANNFLDNNAI AINNNVTTPP SPISPHSPPL ASTPSSSSFV SSPSMSSSSP  180
SDQIDDDVSL LTPFGAYTTA VATTTICDQE NESMAMMESW YGLEGLQSPK YVDQMLSGAF  240
FDIDSTQLLD DLYEESDIRL WSFC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.568740.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G081600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284550.0FJ228455.1 Glycine max AP2 domain-containing transcription factor 3 (AP2-3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241199.11e-179AP2 domain-containing transcription factor 3
TrEMBLK7LX440.0K7LX44_SOYBN; Uncharacterized protein
STRINGGLYMA13G02860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.19e-32ERF family protein