PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G063800.1.p
Common NameGLYMA_13G063800, GLYMA_19G021400, Glyma19g02510.1, LOC100794486
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 92aa    MW: 10365.7 Da    PI: 8.5213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G063800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-0819581554
                         HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +i +  ++Lr+l+P+ +   +s K+s + +L+++++YI+sL
  Glyma.13G063800.1.p 19 QIIDLVSKLRQLVPEiR-DRRSDKVSASKVLQETCNYIRSL 58
                         5667779********76.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.645458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-91974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-51958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-91978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQQS ASTRISDDQI IDLVSKLRQL VPEIRDRRSD KVSASKVLQE TCNYIRSLHR  60
EVDDLSERLS QLLATIDADS PEAAIIRSLI N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.562871e-155root| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311281e-137KT031128.1 Glycine max clone HN_CCL_66 bHLH transcription factor (Glyma19g02510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543767.11e-56PREDICTED: transcription factor PRE5
RefseqXP_007151219.11e-56hypothetical protein PHAVU_004G027700g
RefseqXP_014507201.11e-56PREDICTED: transcription factor PRE5
SwissprotQ9LJX11e-44PRE5_ARATH; Transcription factor PRE5
TrEMBLV7C1I42e-56V7C1I4_PHAVU; Uncharacterized protein
TrEMBLA0A0S3T7L72e-56A0A0S3T7L7_PHAAN; Uncharacterized protein
TrEMBLA0A0B2PV912e-56A0A0B2PV91_GLYSO; Transcription factor bHLH135
TrEMBLA0A0K2CT672e-56A0A0K2CT67_SOYBN; BHLH transcription factor (Fragment)
STRINGGLYMA13G05280.15e-56(Glycine max)
STRINGGLYMA19G02510.15e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18771240
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.16e-38bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]