PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G046300.1.p
Common NameGLYMA_13G046300, LOC100814175
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 289aa    MW: 31337.8 Da    PI: 7.9465
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G046300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-3141081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Glyma.13G046300.1.p   4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallkee 100
                          ql+q+++e++l +e+
  Glyma.13G046300.1.p  94 QLCQAAVEAVLKGEP 108
                          ********9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.9E-951286IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0783109IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGEPIT PITSEAAANG  120
RAPPLKAYDI RHVSKDQNSA NETPKTKTRS RFKRTSGTLI KPKASKGTGF VPVEPEMANR  180
TASHESGLSH LSEATAMVEG ESKESESVVS MDTSNLIHEE PEWVAKTSDG TGESGNEIGL  240
ELTLGFEPVS RLHHVVPMKK RKIIELKSCG DSAEKDSCKM ELGLEYPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.233670.0cotyledon| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G046300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541285.10.0LOB domain-containing protein 41
RefseqXP_028195881.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-110LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A445HB360.0A0A445HB36_GLYSO; LOB domain-containing protein 41
TrEMBLI1LX210.0I1LX21_SOYBN; Uncharacterized protein
STRINGGLYMA13G07590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-105LOB domain-containing protein 41