PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G207200.1.p
Common NameGLYMA_12G207200, LOC100778666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 481aa    MW: 53273.6 Da    PI: 8.8804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G207200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-056385123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C k F r  nL+ H r H
  Glyma.12G207200.1.p 63 FVCEICLKGFQRDQNLQLHRRGH 85
                         89*******************88 PP

2zf-C2H213.30.00024139161123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k++  +s+ k H +t+
  Glyma.12G207200.1.p 139 WRCEKCSKRYAVQSDWKAHSKTC 161
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-46285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3056385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-4127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MLEKMDDGEI SNVFPHQNPS IAASNNHDQP PILKRKRNLP GNPDPDAEVI TLSPKTLMAT  60
NRFVCEICLK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR KRVYVCPEKT CVHHHPSRAL  120
GDLTGIKKHF CRKHGEKKWR CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF  180
ITHRAFCDAL AEQTARVNAA SNISNYSIMQ NPVGSDMATH FSSFFKPNSC PDQEPAPGNQ  240
TSNKGLSLWM TQTSQAHHET MVNNNNLHEF YQLGSVTSPT AIYGTSGNPL ASCSNPPPSN  300
YQLNWVLGNK LSTNGSHQEL TSTASLPLVN NIVKDNPNLQ LISVPSLYSS QHQSHQTTSA  360
NMSATALLQK AAQIGTTSSD PSSLFLASIG LKCNSPGQDG NKFCGMYGSS SVLTSHWSEA  420
ENNNNNNNNH NHSGDLSQMP PTKRLHVQNE ESAWGQTRDF LGVGAANHLP PFINQRMDLS  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-36135202370Zinc finger protein JACKDAW
5b3h_F4e-36135202370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the ground tissue and stele cells of embryos and 2-days post-germination roots but not in the quiescent center (PubMed:17785527). Detected only in cells that perform asymmetric cell divisions (PubMed:17785527). In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:25829440}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G207200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539541.20.0zinc finger protein MAGPIE
RefseqXP_028193041.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-136IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLK7LW490.0K7LW49_SOYBN; Uncharacterized protein
STRINGGLYMA12G33500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]