PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G197700.1.p
Common NameGLYMA_12G197700, LOC100527471
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 198aa    MW: 20952.4 Da    PI: 8.9136
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G197700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1863113155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta +Aa a+++a+++++g
  Glyma.12G197700.1.p  63 CNYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGTFPTAIGAALAYDEAARAMYG 113
                          56*****999.**********8...2.359***********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-3063122No hitNo description
PfamPF008471.2E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103221.64164121IPR001471AP2/ERF domain
SMARTSM003803.8E-3764127IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2064121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3164122IPR001471AP2/ERF domain
PRINTSPR003674.2E-96576IPR001471AP2/ERF domain
PRINTSPR003674.2E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLAKTHNKGD GSKSLAKILA KWKEYNAQID SSSDADKPVR KVPAKGSKKG CMKGKGGPEN  60
SRCNYRGVRQ RTWGKWVAEI REPNRGNRLW LGTFPTAIGA ALAYDEAARA MYGSCARLNF  120
PNVSVSSFSE ESSKDSPVAN HCGSSMAVSA NESMISPSNS GVGAEDDVDM EPISLSLTVK  180
HENGEGESGI SSSPPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1864121260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-1864121563ATERF1
3gcc_A5e-1864121563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.71840.0cotyledon| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G197700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923140.0BT092314.1 Soybean clone JCVI-FLGm-10J23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236509.21e-143DNA-binding domain-containing protein
RefseqXP_028192272.11e-143putative dehydration-responsive element-binding protein 2H isoform X1
RefseqXP_028192274.11e-143putative dehydration-responsive element-binding protein 2H isoform X2
SwissprotA2WL191e-50DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF72e-50DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0B2QVW41e-142A0A0B2QVW4_GLYSO; Dehydration-responsive element-binding protein 2A
TrEMBLI1LU971e-142I1LU97_SOYBN; Uncharacterized protein
STRINGGLYMA12G32400.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-40DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sun SJ, et al.
    Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.
    J. Exp. Bot., 2010. 61(10): p. 2807-18
    [PMID:20460361]
  3. Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T
    Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).
    Biotechnol. Lett., 2011. 33(8): p. 1689-97
    [PMID:21528404]
  4. Cui M, et al.
    Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.
    Plant Physiol. Biochem., 2011. 49(12): p. 1384-91
    [PMID:22078375]
  5. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  6. Li X, et al.
    LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
    Plant Cell Physiol., 2013. 54(7): p. 1172-85
    [PMID:23695503]
  7. Schmidt R, et al.
    Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
    Plant Cell, 2013. 25(6): p. 2115-31
    [PMID:23800963]
  8. Huang YC,Huang WL,Hong CY,Lur HS,Chang MC
    Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance.
    Rice (N Y), 2012. 5(1): p. 33
    [PMID:24279948]
  9. Zhang XX, et al.
    OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean.
    PLoS ONE, 2013. 8(12): p. e83011
    [PMID:24376625]
  10. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  11. Ma T, et al.
    LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.
    Plant Cell Rep., 2014. 33(9): p. 1507-18
    [PMID:24913125]
  12. Zhao J, et al.
    Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.
    Physiol Plant, 2015. 154(3): p. 381-94
    [PMID:25263631]
  13. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  14. Gao Y, et al.
    A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.
    Plant Mol. Biol., 2015. 87(4-5): p. 413-28
    [PMID:25636202]
  15. Cai W, et al.
    Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance.
    PLoS ONE, 2015. 10(6): p. e0131599
    [PMID:26121399]
  16. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  17. Sato H, et al.
    The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1756-67
    [PMID:26841113]
  18. Yu Y, et al.
    Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.
    Genet. Mol. Res., 2016.
    [PMID:26909954]