PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G178900.1.p
Common NameGLYMA_12G178900, Glyma12g30270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 314aa    MW: 33658.2 Da    PI: 8.2277
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G178900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011128150123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.12G178900.1.p 128 YECKTCSRTFPSFQALGGHRASH 150
                          99**********99999998887 PP

2zf-C2H213.20.00027219241123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.12G178900.1.p 219 HECSICGSEFTSGQALGGHMRRH 241
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.4E-13127152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8127150No hitNo description
SMARTSM003550.11128150IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-8214241No hitNo description
PfamPF139122.3E-11219243IPR007087Zinc finger, C2H2
SMARTSM003550.019219241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263219246IPR007087Zinc finger, C2H2
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MLAQMDMEEL VSCNNNDATN IAKGKRTKRR LRPLSPCAVV AATTITTTTT AITAITTVMT  60
SSCSSASAGG GGSSSSTTFE EEEEDMANCL ILLAQGRVGR DPPHHHKDLC GDVKTEKGST  120
KVDHLYVYEC KTCSRTFPSF QALGGHRASH KKPKMEEKKL LSPPLLLPPL PASSSSLFNF  180
EEAKQSHMKN IISPSVSLQL GCGINKVGLN FHGNKSKIHE CSICGSEFTS GQALGGHMRR  240
HRASNNNNNI VQTTTTTTTT SNGAVDVKPR NVLELDLNLP APEDDLRDSK FQFPANPNSM  300
MLSAAPALVG CHY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.600890.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G178900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311500.0KT031150.1 Glycine max clone HN_CCL_170 C2H2-Zn transcription factor (Glyma12g30270.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304533.20.0C2H2-type zinc finger protein 3
RefseqXP_028192885.10.0zinc finger protein ZAT5-like
TrEMBLA0A0B2R6Z20.0A0A0B2R6Z2_GLYSO; Zinc finger protein ZAT5
TrEMBLI1LTN70.0I1LTN7_SOYBN; C2H2-Zn transcription factor
STRINGGLYMA12G30270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-54C2H2 family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]