PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G168300.1.p
Common NameGLYMA_12G168300, LOC100814151
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 435aa    MW: 46029.5 Da    PI: 7.1176
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G168300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.83.1e-4172170389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                            k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++   
  Glyma.12G168300.1.p  72 NTKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsk 161
                          679*****************************************************************9998888888888855555444 PP

                  TCP  89 ........k 89 
                                  +
  Glyma.12G168300.1.p 162 saphtfhgA 170
                          444444431 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3976197IPR005333Transcription factor, TCP
PROSITE profilePS5136928.49677131IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MELSDLQNKK QSSSSSSTGA THQQQQQQQQ SSSTHLVVPS PSNSSASLID ASLAIATRSD  60
DSTKKTQQPS TNTKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL  120
LQQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA LALAHHPYDE  180
AFQHPALLGF HPHHHQQQLL SADQIAEALP SAGGGDSGGN YLRKRYREDL FKDDNINNTQ  240
SQNDSGDADG DADGDGSSPK LPKEAGSGLL RPTNLLPATA MWASGPPGST IWMLPVTAAA  300
ASSSSSSSSA SSAASSESQM WAFPQSVSGF MPRFNLPVPG ALEFQGARAG SLQLGPSMLM  360
PPPPLPPQQQ QQPSQHLGLA MSDSNLGMLA ALNAYARAGL NINSDHHHHH HHHHHHQHQS  420
QPSESGEDAP NSSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.211230.0cotyledon| meristem| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G168300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-137AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592668.10.0transcription factor TCP8
TrEMBLK7LVD80.0K7LVD8_SOYBN; Uncharacterized protein
STRINGGLYMA12G28970.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-68TCP family protein