PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G158900.1.p
Common NameGLYMA_12G158900, LOC100800275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 398aa    MW: 43139.3 Da    PI: 6.8963
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G158900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.14.4e-36431672104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssa 82 
                          +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++          +       ++++ +  
  Glyma.12G158900.1.p  43 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELppwnptatpMQ------PPSQEIVHR 126
                          79**************************************************************87555444322......344444444 PP

                  TCP  83 snsssg......................kaaksaakskksqksa 104
                          +n+s g                      +++++++++    +++
  Glyma.12G158900.1.p 127 ENKSLGmddsltafscrgespafaaatrDSEQFSHPQV---EQN 167
                          44444455555677777776666543322222222111...111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3243170IPR005333Transcription factor, TCP
PROSITE profilePS5136932.53745103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGEPQHPHQH HQQAAATPSR AAMRGGGGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD  60
RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DQLAELPPWN PTATPMQPPS  120
QEIVHRENKS LGMDDSLTAF SCRGESPAFA AATRDSEQFS HPQVEQNENA NNISSSSISI  180
KYNSGSGFLP ASLDTDNIAE TIKTFFPVEA TTTSFQSYPP APPDLGQQDL RLSLQSFQDP  240
IMLHHQPQSH HEPVLFAGTA AAALGFDGGY GWSEHQHQNH HSEEQRLLYA GGNSGHGGGF  300
VFNTPAPVPA FGQFFSQRGP LQSSNTPSIR AWIDPSVDHH HHHHHYLSQL IHQGSVAGGS  360
GFSSGFSGFR IPARIQGEEE HDGVSDKPSS ASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2050103154Putative transcription factor PCF6
5zkt_B2e-2050103154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.346720.0cotyledon| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G158900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592557.10.0transcription factor TCP3
SwissprotQ9MAH81e-101TCP3_ARATH; Transcription factor TCP3
TrEMBLK7LUU90.0K7LUU9_SOYBN; Uncharacterized protein
STRINGGLYMA12G20160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-66TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3
Publications ? help Back to Top
  1. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]