PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G121500.1.p
Common NameGLYMA_12G121500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 292aa    MW: 32086.2 Da    PI: 6.9696
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G121500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.92.2e-35201232100
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssas 83 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+ l+++        +          +++++++
  Glyma.12G121500.1.p  20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDRLAELppwhppthE----------EEKQNDA 99 
                          79**************************************************************443332220..........2222222 PP

                  TCP  84 nsssg.............kaaksaakskks 100
                          + s +             +      + +++
  Glyma.12G121500.1.p 100 AGSTPkaigafssthadtD------PINFQ 123
                          2222233444432212220......22222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-3120104IPR005333Transcription factor, TCP
PROSITE profilePS5136931.8722280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MRTGVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKTSIDRL AELPPWHPPT HEEEKQNDAA GSTPKAIGAF SSTHADTDPI  120
NFQTNNSSED LGLSLHCFQD HPGLIHWQSQ QTGAHQTPPS NEHQIRTLFA GSTPGGFENH  180
YQRSVTWNNE ATTTDHVNRL GFILNSQPFI GQGSTSAYAQ SGGTLQSSFS FPMTSPSELH  240
RPQPVNQPSI FDSRFVSDGL ADFCIPDRIQ GVEENHGVAS NRPSSSPSSI H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-212780154Putative transcription factor PCF6
5zkt_B1e-212780154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225410.0cotyledon| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G121500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-175AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193708.10.0transcription factor TCP4-like
TrEMBLI1LSA40.0I1LSA4_SOYBN; Uncharacterized protein
STRINGGLYMA12G14200.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-49TCP family protein