PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G072400.1.p
Common NameGLYMA_12G072400, LOC100799737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 306aa    MW: 33654.3 Da    PI: 7.6559
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G072400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1291.4e-403596263
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                         +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Glyma.12G072400.1.p 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96
                         7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.7E-343793IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-263993IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6463993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPSSGQHQQ MSSQSLENML ACSKAQQERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS  60
QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS TSKRVQDQAF TPNPNSLIGL  120
PSLSYDSSDL TLALARLQKQ SCGQLGYDEH DLSMLGNHHP STPCDNILGM HHHSSSSTNP  180
GFLDALRSGF LGTQSSNMQQ NLYYGYGNGD MGEVDNGNAS CGGEMMMMPY NDQEMSVAST  240
QAVTVTTMKQ EICNGREPSS ESRVLWGFPW QFNNADTNMG ELDSGRASWN GINSSWHGLL  300
NSPLM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286330.0meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G072400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539737.10.0dof zinc finger protein DOF2.1
RefseqXP_028192376.10.0dof zinc finger protein DOF2.1-like
TrEMBLA0A0B2PDL20.0A0A0B2PDL2_GLYSO; Dof zinc finger protein DOF2.1
TrEMBLI1LR010.0I1LR01_SOYBN; Uncharacterized protein
STRINGGLYMA12G07710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-49Dof family protein