PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G070300.1.p
Common NameGLYMA_12G070300, LOC100781896
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 542aa    MW: 60200.1 Da    PI: 8.2848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G070300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000267090323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ C+k F r  nL+ H r H
  Glyma.12G070300.1.p 70 CEVCNKGFQRDQNLQLHRRGH 90
                         *******************88 PP

2zf-C2H211.10.0012145167123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H + +
  Glyma.12G070300.1.p 145 WKCDKCSKKYAVQSDWKAHSKIC 167
                          58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.93E-76790No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456890IPR007087Zinc finger, C2H2
SMARTSM003550.136890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM0035578110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-5133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.93E-7140165No hitNo description
SMARTSM00355150145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MMSEETFSVP PNSTIRATSL VHHVHVQPPS PNPNSNPAKR RRSLPGTPDP DAEVVALSPK  60
SLMATNRFLC EVCNKGFQRD QNLQLHRRGH NLPWKLKKRT NNDQVRKKVY VCPEKSCVHH  120
DPSRALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALAEES ARVTTIPAAL SNLRSDHHHH LTNAQASRIP QIFSGFHSSD  240
QFGGGSSEAL LANHHHQQKL RLPLWLDHHQ VNNTQVLHHT LDNFSTEPSA FTSGTNSVPH  300
DLVQTMDMFG PQTQFVNYRY PEASFGGGNA NLSVLPPHGL KQEQEENKQH LSHSGASSNN  360
LYLSNSIQNP PHHHYMSATT LLQKAVQMGS TRISDNVFGS IVGTTNRNNN NDNNTNLEVQ  420
KLNELVSMEA GCNNNLGGGG DGYLLYDSFG VVNGTDKGLE HMVMPVDEET QQESIVGNSL  480
CSNNKNQLGL TRDFLGVGDN NNNLNPIRRP FFQQDLVEFN AMGSASASVM NLQSQYGGHY  540
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36141206368Zinc finger protein JACKDAW
5b3h_F3e-36141206368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194107KLKKRTNNDQVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.221120.0cotyledon| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G070300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-154AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540744.20.0protein indeterminate-domain 9
TrEMBLK7LTF80.0K7LTF8_SOYBN; Uncharacterized protein
STRINGGLYMA12G07510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-102C2H2-like zinc finger protein