PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G018000.4.p
Common NameGLYMA_12G018000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family E2F/DP
Protein Properties Length: 317aa    MW: 35296.6 Da    PI: 5.1685
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G018000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.4e-2766148271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Glyma.12G018000.4.p  66 SGRGLRQFSMK---VCEKVESrGRTTYNEVADELVAEfsepsnselppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 148
                          689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.8E-1254316IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.5E-4561153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-3465148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.9E-2567148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.62E-2168149IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.38E-43153256IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-42155262No hitNo description
SMARTSM011382.0E-67155314IPR014889Transcription factor DP, C-terminal
PfamPF087811.8E-41156268IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGDEEEEEVL GSGQSASTNS LPPPADSTLL KLNHLDIHAD DAVSHASLAA KKKKRGGQRA  60
VGPDKSGRGL RQFSMKVCEK VESRGRTTYN EVADELVAEF SEPSNSELPP DQQQYDEKNI  120
RRRVYDALNV LMAMDIISKD KKEIQWRGLP RTTVNDIEEL KTERLGLRNR IEKKTAYLQE  180
LEEQFVGLQN LIQRNEQLYS SGNPPSGGVS LPFILVQTRP HATVEVEISE DMQLVHFDFN  240
STPFELHDDN YVLKAMKFGE RPLEDNMTHN LTDGGEGSSM SGLCQPQAPT ILNVSNRPPT  300
SPPLPGILKA RVKQEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3459153193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.561260.0leaf| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942120.0BT094212.1 Soybean clone JCVI-FLGm-18G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242415.10.0uncharacterized protein LOC100798342
SwissprotQ9FNY21e-142DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0B2SNP90.0A0A0B2SNP9_GLYSO; Transcription factor-like protein DPB
TrEMBLA0A0R0HDH90.0A0A0R0HDH9_SOYBN; Uncharacterized protein
STRINGGLYMA12G02050.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-139Transcription factor DP