PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G239200.1.p
Common NameGLYMA_11G239200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 319aa    MW: 35517.7 Da    PI: 7.4621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G239200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20137187256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  Glyma.11G239200.1.p 137 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 187
                          59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.81E-36136196No hitNo description
SMARTSM003802.1E-40137200IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-23137195IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-33137195IPR001471AP2/ERF domain
PROSITE profilePS5103223.617137194IPR001471AP2/ERF domain
PRINTSPR003673.8E-11138149IPR001471AP2/ERF domain
PfamPF008473.3E-14138187IPR001471AP2/ERF domain
PRINTSPR003673.8E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTTFMDMYNT TSSIMTPDFL DQCSDQELMK ALEPFMKSDS SSTTSSSITT YPSFSSFSSS  60
PNLSSTTWST QFCSSSYHQK GPTPTQASSF KLNQLTPSQI FQIQAQIQVP RAQFLSPKPI  120
TMKHVRASCS NSKATKLYRG VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAALAYDNA  180
AFKLRGENAR LNFPHLRHHG ARVYGEFGNY KPLPSAVDAK LQAICQSLGT KLQKLKTDQN  240
PVVDAKVKKT SEFEDFKIEN QTSSSSALSD EYSSSSSSPE SDITFLDFSD SCETTCNLGL  300
DLEKYPSVEI DWAALSES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23136194160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.70400.0cotyledon| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G239200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0933060.0BT093306.1 Soybean clone JCVI-FLGm-24E1 unknown mRNA.
GenBankJQ9241910.0JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304409.20.0ethylene-responsive transcription factor ERF060-like
SwissprotQ8H1E42e-72RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0R0HLE40.0A0A0R0HLE4_SOYBN; Uncharacterized protein
STRINGGLYMA18G02170.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-56related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]