PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G231300.2.p
Common NameGLYMA_11G231300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 233aa    MW: 25636.7 Da    PI: 9.6829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G231300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-124490354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         ++h ++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Glyma.11G231300.2.p 44 KSHRQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 90
                         79*************************8.....7************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8754190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-134493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-84493No hitNo description
PfamPF000103.8E-104490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-104796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00696139174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSVPTQQILP HHVTDAASLQ FGEFHSWSLP IEGAAEERAI SASKSHRQAE KRRRDRINAQ  60
LATLRKLIPK SDKMDKAALL GSVIDQVKDL KRKAMDVSRA FTVPTEIDEV SIHHDHVLQD  120
ESCTEKVNKL KDNIVIKASV CCDDRPELFP ELIQVLKGLR LTAVKADIAS VGGRIKSILV  180
LCSKDSESVC LATLKQSLKS AITKIASSSS MASSCPSRSK RQRFFLPSHC LQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.364870.0hypocotyl| meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894760.0BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235786.11e-165uncharacterized protein LOC100305722
SwissprotQ9XEF02e-49BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A0R0HL191e-168A0A0R0HL19_SOYBN; Uncharacterized protein
STRINGGLYMA11G35480.11e-166(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-41bHLH family protein