PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G231300.1.p
Common NameGLYMA_11G231300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 281aa    MW: 31174.8 Da    PI: 9.5763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G231300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-1292138354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h ++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Glyma.11G231300.1.p  92 KSHRQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 138
                          79*************************8.....7***********9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.87589138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1392141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.16E-992141No hitNo description
SuperFamilySSF474596.02E-1292141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-1092138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1095144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00572187222No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MMGDKRLRNH GRNFRMVSIV TMENYYDSGW HMGTSNWAQC SDHSSSSSFA VPTQQILPHH  60
VTDAASLQFG EFHSWSLPIE GAAEERAISA SKSHRQAEKR RRDRINAQLA TLRKLIPKSD  120
KMDKAALLGS VIDQVKDLKR KAMDVSRAFT VPTEIDEVSI HHDHVLQDES CTEKVNKLKD  180
NIVIKASVCC DDRPELFPEL IQVLKGLRLT AVKADIASVG GRIKSILVLC SKDSESVCLA  240
TLKQSLKSAI TKIASSSSMA SSCPSRSKRQ RFFLPSHCLQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.364870.0hypocotyl| meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0894760.0BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235786.10.0uncharacterized protein LOC100305722
SwissprotQ9XEF07e-49BH051_ARATH; Transcription factor bHLH51
TrEMBLI1LMT10.0I1LMT1_SOYBN; Uncharacterized protein
STRINGGLYMA11G35480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-41bHLH family protein