PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G192600.1.p
Common NameGLYMA_11G192600, LOC100782408
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 309aa    MW: 33354.1 Da    PI: 7.1452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G192600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071129151123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.11G192600.1.p 129 YECKTCNRTFPSFQALGGHRASH 151
                          99**********99999998887 PP

2zf-C2H213.20.00027214236123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  F++   L  H+r+H
  Glyma.11G192600.1.p 214 HECSICGSEFTSGQALGGHMRRH 236
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.84E-9128151No hitNo description
PROSITE profilePS5015710.305129156IPR007087Zinc finger, C2H2
SMARTSM003550.052129151IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-13129153IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576678.84E-9209236No hitNo description
PROSITE profilePS5015710.076214241IPR007087Zinc finger, C2H2
SMARTSM003550.019214236IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11214238IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEMEGLDSNN STHNGIAKGK RTKRMRLLSP CGVVATTVTS STSSASSTTT YESEEEDMAN  60
CLILLAQGGE SHHHPPRHDK QQVEDHGLEN CDGVIKTEEK GNNNSDNVNA TPTATTTTAA  120
TTKVGFYIYE CKTCNRTFPS FQALGGHRAS HKKPKLAAEE KKQPLPPPAQ PSPPSQLQHM  180
IVTNYDRFEE GNVKSGPPIS LQLGNNGNNK GKIHECSICG SEFTSGQALG GHMRRHRAST  240
NTNTTVVDTT RCNTVSTTII TTAPPRNILQ LDLNLPAPED DIREAKFQFA TTTTQVLVGT  300
PALVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G192600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538193.10.0zinc finger protein ZAT5
RefseqXP_028187846.10.0zinc finger protein ZAT5-like
TrEMBLA0A0R0HTT40.0A0A0R0HTT4_SOYBN; Uncharacterized protein
TrEMBLA0A445I4E10.0A0A445I4E1_GLYSO; Zinc finger protein ZAT5
STRINGGLYMA11G19830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-46C2H2 family protein