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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G138200.1.p | ||||||||
Common Name | GLYMA_11G138200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 169aa MW: 18975.8 Da PI: 9.3186 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 33.4 | 6e-11 | 62 | 108 | 293 | 339 |
GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 +++n++aceg+er+er et+++W+ r ++aGFk + l+e+++++ ++ Glyma.11G138200.1.p 62 NVMNAIACEGSERIERPETYKQWQVRNTRAGFKRLLLNEETMAKFRT 108 799************************************99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.635 | 1 | 123 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-8 | 62 | 108 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MEPSLRDPSL EDNDFSETSK FISQILMEEN KSFYQALTEN IPIFPNQHPL LLLTPIGETT 60 SNVMNAIACE GSERIERPET YKQWQVRNTR AGFKRLLLNE ETMAKFRTGI RTGCFKVGRA 120 TFCTLPLVGR CYQTLFRAHT RLKGSILLSI IRSSNLGFGG AIKVGREG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21751 | 3e-38 | leaf | ||||
Gma.4417 | 3e-38 | hypocotyl| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539082.1 | 2e-19 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | K7LPM8 | 1e-122 | K7LPM8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14690.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14801 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 5e-15 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G138200.1.p |