PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G055300.1.p
Common NameGLYMA_11G055300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 243aa    MW: 27213.3 Da    PI: 9.6564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G055300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08145185954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Glyma.11G055300.1.p 145 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 185
                          699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14137195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14140195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6146185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-6159190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVDILKTST SDNISMDMMM TMMQMEKFPE FCEPFYNNNN NTSTAPLYPE NELLINSTTT  60
LPVFSNVINN PNVITPPPSS SNFIQQQPMT PHLEPNLEKR NSVAAMREMI FRVAVMQPIH  120
IDPESIKPPK RRNVKISKDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIH  180
YVKFLKKQVQ TLEQAGASRP LNVVGFPTTA SNANNNNSYS GFVKSCQPYP MLGSAASKQL  240
LS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291120.0cotyledon| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977110.0BT097711.1 Soybean clone JCVI-FLGm-22O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304396.11e-178transcription factor HEC1-like
SwissprotQ9FHA77e-56HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0B2SA941e-180A0A0B2SA94_GLYSO; Transcription factor HEC1
TrEMBLI1LHE11e-180I1LHE1_SOYBN; Uncharacterized protein
STRINGGLYMA11G05920.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-43bHLH family protein