PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G054600.1.p
Common NameGlyma11g05810.1, LOC100793754
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 382aa    MW: 41491.9 Da    PI: 6.272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G054600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15144190455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Glyma.11G054600.1.p 144 VHNLSEKRRRGRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 190
                          6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-19137200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.625140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.15E-17143194No hitNo description
PfamPF000103.7E-13144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-18146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGDMYHFDKN LSSQDEISLF LRQILLRSSS PSHSMPAGSC TSNAAQQNVN AHHPSFTASQ  60
LQDGKILAVD STASFVSGSA ACSSFKGHGA SAANVSSSSA GVSENENDDY DCESEEGVEA  120
PAEEVPTKAA SSRSSSKRSR AAEVHNLSEK RRRGRINEKM KALQNLIPNS NKTDKASMLD  180
EAIEYLKQLQ LQVQMLSMRN GLSLHPMCFP EGLQPLQLSQ MGMELSERNR FTSLNMSATL  240
PLHQDNNPLH YASNLPNKHN LPNQPSVPYP PYIDNPETSF GLEPRIQTDM KPLQHKGGSS  300
EPIRGEDILQ HQQSSGIHSD ANTLGGSQVV KEFESGTRLS FPFDTQACEP KDNSNSSQPC  360
IGGRDHSGVI IRNSETNIVG R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241010.0cotyledon| flower| hypocotyl| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311170.0KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539355.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLA0A0B2SCV60.0A0A0B2SCV6_GLYSO; Transcription factor SPATULA
TrEMBLI1LHD30.0I1LHD3_SOYBN; BHLH transcription factor
STRINGGLYMA11G05810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-40bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]