PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G280000.1.p
Common NameGLYMA_10G280000, LOC100786121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 572aa    MW: 61730.7 Da    PI: 9.5737
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G280000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057294123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Glyma.10G280000.1.p 72 FICEVCNKGFQREQNLQLHRRGH 94
                         89*******************88 PP

2zf-C2H211.90.00069148170123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.10G280000.1.p 148 WKCDKCSKKYAVQSDWKAHSKTC 170
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-77194No hitNo description
Gene3DG3DSA:3.30.160.606.3E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.8E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997294IPR007087Zinc finger, C2H2
SMARTSM003550.00527294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355130113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7143168No hitNo description
SMARTSM00355150148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAASSSSASL FGFREEDQQN QMKQQHSLTP SPSTTPAAPP PQKKKRNQPG TPYPDAEVIA  60
LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC  120
VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESARQPPSL SGGGIGSHLY GSTTNMALNL SQVGSQIQDP  240
SNAQPTELLR LGATSGRTGH FDHILGSPFR PSNQQQQPFF MSEQPNQTYH HPDQNKPFQQ  300
GLMQQLSDHH HLNNNNSPFN LPFLSSNTAN ASFSEHFNNA NGGGNNNNNN EGTNYFATSS  360
APSLFSNSAN ANANALSHMS ATALLQKAAQ MGATSSNGTA SLLKSFGSAS SSSGGGSKSE  420
QQHRVPPLVN AANYVGGMFG GNHVNEQQSN SNLQDLMNSF AVGGNSSIFE AGGFEAYDHS  480
NNNNNRDPKV LAMSGSNSVG GSDRLTRDFL GVGQIVRGMS GSGGVAQREQ QQQHGFNLSS  540
LEAERNNNNN NSNNAAPSSG QAFGGGGGNF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33144205364Zinc finger protein JACKDAW
5b3h_F1e-33144205364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.524810.0cotyledon| epicotyl| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G280000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604540.0AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536713.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_014618914.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-135IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLI1LF270.0I1LF27_SOYBN; Uncharacterized protein
STRINGGLYMA10G42660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-104indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]