PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G258100.1.p
Common NameGLYMA_10G258100, LOC100803780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 172aa    MW: 18738.6 Da    PI: 7.7088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G258100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.2e-302102196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+l+ ++     p++q++++ +v k+FG+++++++l+++p+++r+++++sl+yeA  r+ +Pv+Gavg+++++++
  Glyma.10G258100.1.p   2 SCNGCRVLRKGCSDDCMLRHCLlwienPQAQAHATLFVTKFFGRATLMSFLSTVPPNQRSALFESLLYEAVGRTINPVNGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelal 96 
                          +l+q+ +e +l
  Glyma.10G258100.1.p  92 HLCQMGVEKVL 102
                          ****9887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7951107IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDDCMLR HCLLWIENPQ AQAHATLFVT KFFGRATLMS FLSTVPPNQR  60
SALFESLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAAAAL TPLIPQVITT  120
SVVRGEIMCH QPKKQCVGTP SEDEESETST FASRPQDSAP QPQTNLLTLF F*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G258100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351771e-84AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535688.11e-126LOB domain-containing protein 38
RefseqXP_028182561.11e-126LOB domain-containing protein 38-like
SwissprotQ9SN231e-55LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445ISS91e-124A0A445ISS9_GLYSO; LOB domain-containing protein 38
TrEMBLK7LLG51e-124K7LLG5_SOYBN; Uncharacterized protein
STRINGGLYMA10G40421.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-57LOB domain-containing protein 38