PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G246200.1.p
Common NameGLYMA_10G246200, LOC100777204
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 381aa    MW: 42963.8 Da    PI: 7.342
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G246200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.62.2e-421052491133
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 
                          a++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s + ++  + +ss+  ++ s+++
  Glyma.10G246200.1.p 105 ATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSGSVSTggD-KSSRDPSGDSNNN 193
                          579**************************************************************55555333321.1111111111111 PP

                  TCP  89 ............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                                         ++  k k +q+ +a   + +kesr++arararert  k++ +
  Glyma.10G246200.1.p 194 fnnnksmvgggvGDGSKGRKLKWAQRGDA-CIQNKKESRERARARARERTCFKKCSS 249
                          33444678999844444445555566555.4777889*************9999976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.3E-42106247IPR005333Transcription factor, TCP
PROSITE profilePS5136934.814108166IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.424228245IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MFSSTYDSNF FPNFPLSTYP ILPFLIESEN DFASHTLLVE DPLVVPLTHD PPPFPEETVA  60
NFAVADHHCT AMLDNQHDAA ANTNYGSHYG SSISNFLTHQ KPAAATAKKD RHSKIHTSQG  120
LRDRRVRLSS EIARKFFDLQ DMLEFDKPSN TLEWLFTKSE NAIKELARSK HSGSVSTGGD  180
KSSRDPSGDS NNNFNNNKSM VGGGVGDGSK GRKLKWAQRG DACIQNKKES RERARARARE  240
RTCFKKCSSI RVQQQKDFDE RCPATTNTTQ MLHQLWSSIQ PEPEEPRARW VQPYYNPYFV  300
DDNEAPRDHG FNVIEESIMI KRNMKPLSQP NLVIPREASF NNNEFPLLPY STTPNWESTN  360
GAVNYCGIST MNLSTCFMNP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230240RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G246200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535644.20.0transcription factor CYCLOIDEA
TrEMBLK7LL850.0K7LL85_SOYBN; Uncharacterized protein
STRINGGLYMA10G39141.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-24TCP family protein