PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G206600.1.p
Common NameGLYMA_10G206600, LOC100795090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 556aa    MW: 60629.2 Da    PI: 9.0155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G206600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C+k F r  nL+ H r H
  Glyma.10G206600.1.p 66 FICEVCNKGFQREQNLQLHRRGH 88
                         89*******************88 PP

2zf-C2H212.60.00042142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Glyma.10G206600.1.p 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-76588No hitNo description
SMARTSM003550.00526688IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.996688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355110107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.1E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MAAASSSTPF LGIREESPQI TTHHQPSTVS PTTAPQKKRR NQPGTPYPDA EVIKLSPKTL  60
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EQKRKVYLCP EPTCVHHDPS  120
RALGDLTGIK KHYYRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAQESARF PGGLNPLGTH LFGTNHTTSL SLSQVGNQLS QVQKQNQTAT  240
NYNSILRLGN NNVGAAATKF EHLIPPLNHS SFGHSPQSMP SSAFFMNDNT NQALFEEHQS  300
QLQGLMQLQD LQGNTNNSDS SSVGPPNSNL FNLSFFPISS NIGTGTIIPG QFNNISGSNQ  360
GTTTTTTTTL YGNSIENESS PHAGSSFSSI FGNSIENASS SHMSATALLQ QAAQMGSTTT  420
TTTNNGSSLL GGMCTNNSSK AENDHHHNLQ GLMNSIANGN TSLFGSMQGN ENNLCGFHNV  480
DESNNNKLPQ NLSVNFGGSD KLTLDFLGVG GMMTNMSGGF SQREQQQHVT GTMSSLDHDL  540
KSAQSYRHFG KSTLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34138199364Zinc finger protein JACKDAW
5b3h_F2e-34138199364Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.274360.0cotyledon| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G206600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535516.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_006589397.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_028184488.10.0protein indeterminate-domain 4, chloroplastic-like
RefseqXP_028184489.10.0protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC11e-132IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A445IQ800.0A0A445IQ80_GLYSO; Protein indeterminate-domain 4, chloroplastic isoform A
TrEMBLK7LKK10.0K7LKK1_SOYBN; Uncharacterized protein
STRINGGLYMA10G35070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-106indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]