PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G155900.1.p
Common NameGLYMA_10G155900, LOC100776494
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 265aa    MW: 29533.4 Da    PI: 6.5841
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G155900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.5e-55841862101
                NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                          l++fw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi
  Glyma.10G155900.1.p  84 LQAFWANQyqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDI 173
                          89*****99999****************************************************************************** PP

                NF-YC  89 fdflvdivprdel 101
                          fdflvdivpr++l
  Glyma.10G155900.1.p 174 FDFLVDIVPREDL 186
                          **********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3368177IPR009072Histone-fold
PfamPF008081.7E-21105168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-37106183IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDHQGHGHGH GQNPSMGVVG NGPQFPYGSN PYQASHMTGS PGMVVASPGT IQSTGQPPST  60
QLGQHQLAYQ HMHQQQQQQL RQRLQAFWAN QYQEIEKVTD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR TDIFDFLVDI  180
VPREDLKDEV LASMPRGDVP VTGPPEALPY CYMPPQQVGA AGVMMGNKPV MDPYAQQTHP  240
YNMAPQLWPQ PPPPPEQQQS SPDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4csr_B7e-4198183994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4awl_C7e-4198183994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
1n1j_B9e-41981831297NF-YC
4g92_C1e-40691834119HapE
4g91_C1e-40691834119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618677.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like
SwissprotQ8L4B25e-80NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLK7LJM00.0K7LJM0_SOYBN; Uncharacterized protein
STRINGGLYMA10G29691.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.44e-78nuclear factor Y, subunit C9