PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G101000.1.p
Common NameGLYMA_10G101000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 286aa    MW: 32856 Da    PI: 8.5869
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G101000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.32.5e-21172227155
              G2-like   1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+W  eLH++F+ +v+ LG  se A Pk+il+lm+ +gLt+e+v+SHLQkY++
  Glyma.10G101000.1.p 172 KPRLVWDVELHRKFLVVVNDLGiDSEFAFPKRILDLMNGEGLTRENVASHLQKYKI 227
                          79*******************733567***************************86 PP

2Response_reg701e-2331111109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          v+ vdD++  + +l++++ k +y +v+++ ++ +ale+l+++   +Dl+  D++mp+mdGl+ll+     ++ lp+i+++a++++e + +
  Glyma.10G101000.1.p   3 VVAVDDDQMCLTVLENLIHKCHY-NVTTTNQAIKALEMLRKNInkFDLLTSDVNMPDMDGLKLLELVGL-QMGLPVIMLSAYNNKERVMR 90 
                          5679*******************.***************887667*******************98844.458***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga ++l+Kp+ +eel +
  Glyma.10G101000.1.p  91 GVIQGACEYLTKPVRIEELQN 111
                          ******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.2E-371160No hitNo description
SuperFamilySSF521725.55E-311124IPR011006CheY-like superfamily
SMARTSM004481.6E-251113IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.6232117IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-213111IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.17E-246117No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21169227IPR009057Homeodomain-like
SuperFamilySSF466891.15E-13170228IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-19172226IPR006447Myb domain, plants
SuperFamilySSF525401.93E-7248278IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF002254.0E-8252276IPR001752Kinesin motor domain
Gene3DG3DSA:3.40.850.104.2E-8252276IPR001752Kinesin motor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007018Biological Processmicrotubule-based movement
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003777Molecular Functionmicrotubule motor activity
GO:0005524Molecular FunctionATP binding
GO:0008017Molecular Functionmicrotubule binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRVVAVDDDQ MCLTVLENLI HKCHYNVTTT NQAIKALEML RKNINKFDLL TSDVNMPDMD  60
GLKLLELVGL QMGLPVIMLS AYNNKERVMR GVIQGACEYL TKPVRIEELQ NIWQHVLRRR  120
IDSKDKNKIA SKGKKAAIWL NIKLGQKRKE QSEDEEEEEY HKENEEHSNQ KKPRLVWDVE  180
LHRKFLVVVN DLGIDSEFAF PKRILDLMNG EGLTRENVAS HLQKYKIGPR KPTWQPSMVA  240
TLGSSDPYLQ MDLLKGFHST IFAYGVTSSG KTHTMHYWVH LPSSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18168231162ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G101000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541468.11e-133two-component response regulator ARR12
RefseqXP_028188502.11e-133two-component response regulator ARR12-like
SwissprotA2X1N24e-85ORR24_ORYSI; Two-component response regulator ORR24
SwissprotB8AEH18e-85ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6H8054e-85ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0R0HRH50.0A0A0R0HRH5_SOYBN; Uncharacterized protein
STRINGGLYMA13G22320.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-83response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]