PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G042800.2.p
Common NameGLYMA_10G042800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 490aa    MW: 54015.4 Da    PI: 6.2333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G042800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16280326455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Glyma.10G042800.2.p 280 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 326
                          5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20274340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.936276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-17279330No hitNo description
Gene3DG3DSA:4.10.280.106.3E-21280334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13280326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDDDDEEYPI PVSKKPSTQN DEIMELLWQN GQVVMQNQNQ RPFRKQPPTT DGDGPIPARE  60
IRSSEAENYN SQHLFMQEDE MASWLHYPIH EDPPPFDHHD FCADILYPPP NATASQNQSS  120
ASVQSSVRTT ELQHPAPRPP IPPPRRQEHT LSRIHNFTHF AKHGNASSSS KAAAPAQPTV  180
ATAEHVETGR ASVSAAAGKT PASDGGRETA TCDVTVTSSP GGSSGSAEPV QREPVVNRKR  240
KGREQEESEY QSEDVDFESP EAKKQVRGST STKRSHAAEV HNLSERRRRD RINEKMKALQ  300
ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCGMVP MIFPGIQQYM PPMGMGIGMG  360
MGMGMEMGMG MNRSVMPFPN MLASSTLPAA TATAHLGPRF PMPPFHMPHV ATPDSSRMQG  420
ANHPDNNMLN SLGTLDPDQS CIPNFTDPYQ QYLSLQQAQL QLMQTMNQPN VSKPSTSRGQ  480
ENPEKHQSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.618790.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536955.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_006588716.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A0R0I0S00.0A0A0R0I0S0_SOYBN; Uncharacterized protein
STRINGGLYMA10G04890.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-40phytochrome interacting factor 3-like 5