PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G029700.1.p
Common NameGLYMA_10G029700, LOC100812496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 464aa    MW: 51750.2 Da    PI: 9.6413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G029700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.10G029700.1.p 73 FVCEICNKGFQRDQNLQLHRRGH 95
                         89*******************88 PP

2zf-C2H212.30.00052149171123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Glyma.10G029700.1.p 149 WKCEKCSKIYAVQSDWKAHSKTC 171
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-67295No hitNo description
PROSITE profilePS5015710.9497395IPR007087Zinc finger, C2H2
PfamPF121717.3E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177395IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355170114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-6144169No hitNo description
SMARTSM00355170149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MFPAVMSNSN SWSEEATVSC GTRITGLNHV VTTTISPQQP QKIKKKRNLP GNPDPDAEVI  60
ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKDVK KKAYVCPEPS  120
CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATNTTTNP LVHSLFLLPT QQRNNNNNIN  240
FINPWDPNPN PSNLTTLHNN NIKPESHNFH IPNTSTNNNN NISSSLLHHH QQPNKRIITS  300
PYRDLHVRTQ PHSNAATSAH LSATALLQKA ATVGAAAITG PTLMTQLSMA ELGAVTTQLD  360
SVPMTVPLPP DQRYMNMRGL KNNNNDGLTR DFLGLTNGSA VDVSIDVKDM LTFTAGSIEY  420
NHRHQQQQSY EHHHSHNNLL FKPQQGFGFL GTTTGPESWG NCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36145209367Zinc finger protein JACKDAW
5b3h_F5e-36145209367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.191740.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G029700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-180AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536915.10.0protein indeterminate-domain 12
SwissprotO227591e-119IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLK7LH380.0K7LH38_SOYBN; Uncharacterized protein
STRINGGLYMA10G03541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-110indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]