PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G007100.1.p
Common NameGLYMA_10G007100, LOC100814296
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 138aa    MW: 15848.7 Da    PI: 9.7899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G007100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.4e-202172256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g+++AeIrdps++g   r +lg+f t eeAa+a+++a+  ++g+
  Glyma.10G007100.1.p 21 RYRGVRRRP-WGKYAAEIRDPSKQG--SRLWLGTFETGEEAARAYDHAAFTMRGH 72
                         6********.**********98865..**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-152172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-322181IPR001471AP2/ERF domain
SMARTSM003803.0E-352185IPR001471AP2/ERF domain
CDDcd000186.33E-272180No hitNo description
SuperFamilySSF541714.58E-232180IPR016177DNA-binding domain
PROSITE profilePS5103224.3422179IPR001471AP2/ERF domain
PRINTSPR003672.8E-112233IPR001471AP2/ERF domain
PRINTSPR003672.8E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MVKTQKEKHD KLKEKGRKEV RYRGVRRRPW GKYAAEIRDP SKQGSRLWLG TFETGEEAAR  60
AYDHAAFTMR GHVAILNFPN EYHSHHVRGY SPNLASSSSS ITHAGGGQQR QVFEFEYLDD  120
KVLEELLEFE ENKVQKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-342112214114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G007100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-69AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536845.11e-98ethylene-responsive transcription factor ERF098
SwissprotQ9LTC53e-47ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1L7I22e-97I1L7I2_SOYBN; Uncharacterized protein
STRINGGLYMA10G00990.14e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-43ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]