PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G268700.1.p
Common NameGLYMA_09G268700, LOC100790517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 233aa    MW: 24357.7 Da    PI: 7.8673
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G268700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.35.9e-39151151100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC ++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r d++ +++yeA+ r+rdPvyG+v++i++lqqq+ +
  Glyma.09G268700.1.p  15 PCGACKFLRRKCIPGCIFAPYFDSEQgTSHFAAVHKVFGASNVSKLLLSIPVHRRLDTVITICYEAQSRIRDPVYGCVSHIFALQQQVVS 104
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+ +
  Glyma.09G268700.1.p 105 LQAELSYLHGH 115
                          ******99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.52614116IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3815112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MMSSGSGSGS SSGSPCGACK FLRRKCIPGC IFAPYFDSEQ GTSHFAAVHK VFGASNVSKL  60
LLSIPVHRRL DTVITICYEA QSRIRDPVYG CVSHIFALQQ QVVSLQAELS YLHGHLAQME  120
LPQPPPPLPL PQTMAAPPPG FSIADLPSAT VAAAAATTYD LSSLFDPLGQ TSWAMQQRAI  180
DPRQYNMAAA PSTATTGADI QAVASDIPHR HGSPPSPPAS SSNASPSLSL SK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534608.11e-168PREDICTED: LOB domain-containing protein 18-like
SwissprotO221311e-76LBD18_ARATH; LOB domain-containing protein 18
TrEMBLI1L6U21e-168I1L6U2_SOYBN; Uncharacterized protein
STRINGGLYMA09G40500.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-67LOB domain-containing protein 18