PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G255300.1.p
Common NameGLYMA_09G255300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 288aa    MW: 32646.8 Da    PI: 10.2831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G255300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.87.9e-113778147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT +E++++++a +++  + Wk+I + +g     k ++s+ qky
  Glyma.09G255300.1.p 37 RENWTDQEHDKFLEALHLFERD-WKKIEAFVG-S---KTIRSHAQKY 78
                         789*****************77.*********.5...566*****99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-123184IPR009057Homeodomain-like
PROSITE profilePS5129411.1153283IPR017930Myb domain
TIGRFAMsTIGR015572.4E-133581IPR006447Myb domain, plants
SMARTSM007172.7E-53681IPR001005SANT/Myb domain
PfamPF002491.5E-83778IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-43770IPR009057Homeodomain-like
CDDcd001673.47E-63979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVSLNPNPPQ TFHFFDPFHM EDQSKKVRKP YTITKSRENW TDQEHDKFLE ALHLFERDWK  60
KIEAFVGSKT IRSHAQKYFM KIQKNGTSEH VPPPRPKRKA AHPYPQKASK NSPTISQVAR  120
PFQSSSALSE SSNIYRPDSS SVLRTPVSSV PLPSWGYNVA PPIGLPSYCY SSSNESTPRG  180
WPSSKESDQG KSIIVMPDFA QVYRFIGSVF DPNATNHLQT LKQMNPINVK TVLLSMRNLS  240
TNLRSPEFEN ERRLLSLYNA NLEKGKSGSH HRNQPLSDRS ESAVLYA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G255300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-50AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551672.11e-167protein REVEILLE 6
SwissprotQ8H0W37e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLK7LG150.0K7LG15_SOYBN; Uncharacterized protein
STRINGGLYMA09G39111.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.19e-78MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]