PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G199800.1.p
Common NameGLYMA_09G199800, LOC100775390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 513aa    MW: 56063.4 Da    PI: 7.1974
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G199800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.53.7e-14222281155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  Glyma.09G199800.1.p 222 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 281
                          57*******************666664478446*************************98 PP

2AP250.55.1e-16324375155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Glyma.09G199800.1.p 324 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 375
                          57****************988532...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-17222291IPR016177DNA-binding domain
PfamPF008474.6E-11222281IPR001471AP2/ERF domain
CDDcd000183.26E-21222291No hitNo description
Gene3DG3DSA:3.30.730.101.3E-15223290IPR001471AP2/ERF domain
PROSITE profilePS5103219.137223289IPR001471AP2/ERF domain
SMARTSM003802.3E-29223295IPR001471AP2/ERF domain
PRINTSPR003671.6E-6224235IPR001471AP2/ERF domain
CDDcd000181.52E-11324383No hitNo description
SuperFamilySSF541716.47E-18324384IPR016177DNA-binding domain
PfamPF008472.7E-10324375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18325383IPR001471AP2/ERF domain
PROSITE profilePS5103219.164325383IPR001471AP2/ERF domain
SMARTSM003806.0E-31325389IPR001471AP2/ERF domain
PRINTSPR003671.6E-6365385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MARASTNWLS FSLSPMDMLR TPEPQFVQYD AASDTSSHHY YLDNLYTNGW GNGSLKFEQN  60
LNHSDVSFVQ SSSQSVSHAP PKLEDFLGDS SAVMRYSDSQ TETQDSSLTH IYDHHHHHHH  120
GSSAYFGGDH QDLKAITGFQ AFSTNSGSEV DDSASIGKAQ GSEFGTHSIE SSVNEFAAFS  180
GGTNTGGTLS LAVAQSSEKA VAAAAESDRS KKVVDTFGQR TSIYRGVTRH RWTGRYEAHL  240
WDNSCRREGQ ARKGRQVYLG GYDKEEKAAR SYDLAALKYW GPTATTNFPV SNYSKEVEEM  300
KHVTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE  360
EAAEAYDIAA IKFRGANAVT NFEMNRYDVE AIMKSSLPVG GAAKRLKLSL ESEQKALPVS  420
SSSSSSQQQN PQCGNVSASI NFSSIHQPIA SIPCGIPFDS TTAYYHHNLF QHFHPTNAGT  480
AASAVTSANA NALTALPPTA AAEFFIWPHQ SY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218790.0root| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G199800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587577.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0R0IAV80.0A0A0R0IAV8_SOYBN; Uncharacterized protein
STRINGGLYMA01G02760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-160AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]