PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G190600.1.p
Common NameGLYMA_09G190600, LOC100794896
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 321aa    MW: 35975.8 Da    PI: 6.7474
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G190600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-34171082102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y++++d+++++li w   +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  Glyma.09G190600.1.p  17 FVIKTYNMVNDPTTDKLIMWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGQK 97 
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i r+k+
  Glyma.09G190600.1.p  98 HLLRNIARRKH 108
                          ********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-5413106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3614106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3314106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MMEHNIIVNN NNVIAPFVIK TYNMVNDPTT DKLIMWGPAN NSFIVLDPLD FSHSLLPAFF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE WFLRGQKHLL RNIARRKHGG AGRSNFNLHS  120
HHHPLKVEEL DDEAMVMEIA RLKEEQKALE EELQGMNKRL ETTEKRPQQM MAFLSKVVED  180
PQVLSRILRE REKKHLGEKK RRLIPPPTTT AATTSSSSSS GIKTEFEEDE GNYNIMSSSP  240
ETGLEIDNNN ICSPLAAGYW GEQGCHGYNR GAVTAPLTVV APAVPTMGGG YLGRGVFFGE  300
MAAEGNAVPP YPFSLLEGGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-251410626129Heat shock factor protein 1
5d5v_B3e-251410626129Heat shock factor protein 1
5d5v_D3e-251410626129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.293580.0cotyledon| hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G190600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340360.10.0heat stress transcription factor 16
RefseqXP_028248211.10.0heat stress transcription factor C-1-like
SwissprotQ9LV522e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A445J2Y20.0A0A445J2Y2_GLYSO; Heat stress transcription factor C-1
TrEMBLI1L4I10.0I1L4I1_SOYBN; Uncharacterized protein
STRINGGLYMA09G32300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-74heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]