PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G053000.1.p
Common NameGLYMA_09G053000, LOC100807295
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 138aa    MW: 15348 Da    PI: 5.1184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G053000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-181970256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+ +l+g+
  Glyma.09G053000.1.p 19 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIALRGA 70
                         8********.**********97744...688**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-301978IPR001471AP2/ERF domain
PROSITE profilePS5103223.4991977IPR001471AP2/ERF domain
PfamPF008471.3E-111969IPR001471AP2/ERF domain
CDDcd000181.09E-281978No hitNo description
SMARTSM003803.9E-341983IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-221979IPR016177DNA-binding domain
PRINTSPR003677.9E-112031IPR001471AP2/ERF domain
PRINTSPR003677.9E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEEARKGEQE KERGEEEVKY RGVRKRPWGK FGAEIRDPTK PTGRQWLGTF DTAEEAARAY  60
DRAAIALRGA LAILNFPHEF HSHLPFISSS SSSSCSSTGV VGSSSSAQQG EVIEFEYLDD  120
KVLEDLLELE EKRGKKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-31141229114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366121e-125epicotyl
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G053000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0914581e-123BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534873.17e-96ethylene-responsive transcription factor ERF098
SwissprotQ9LTC57e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLI1L1782e-94I1L178_SOYBN; Uncharacterized protein
STRINGGLYMA09G05860.13e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-12ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]