PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G365100.1.p
Common NameGLYMA_08G365100, LOC100812981
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 297aa    MW: 32277.5 Da    PI: 8.0504
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G365100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.12e-314107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Glyma.08G365100.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q+++e +l ++
  Glyma.08G365100.1.p  94 QLCQAAVENVLKGA 107
                          ******99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.9E-981296IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.8893109IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-254102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG  120
RCPPLKAYDI RHVFKDENSA AASNETQHQR VKTRSRVKRP LAKPKSTANQ NNNINTKNTG  180
TEFGSDEPGL VACDWTEEAL NRSGSHDSTL SHQSEAANAV ESESILSAET SILFRDEPES  240
NPKRLDRTDD VGLELTLGFE PVSGAQHVVP VKKRRIDLKD FSGSSCKMEL GLECSA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.325870.0cotyledon| flower| hypocotyl| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G365100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341001.10.0LBD domain-containing transcription factor
RefseqXP_028246542.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-103LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A445JPZ70.0A0A445JPZ7_GLYSO; LOB domain-containing protein 41
TrEMBLK7LAX80.0K7LAX8_SOYBN; Uncharacterized protein
STRINGGLYMA08G48040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-104LOB domain-containing protein 41