PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G261900.1.p
Common NameGLYMA_08G261900, LOC100789066
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 220aa    MW: 23545.9 Da    PI: 8.2917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G261900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.71.5e-2741081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C++lr++C +dC+++p++     p++q++++ +++k++G++ +++l++++p+++ +++++sl+yeA+ r+ +P  G+vg+++++++
  Glyma.08G261900.1.p   4 SCNGCRILRKGCGEDCAIRPCLewintPQAQANATLFLAKFYGRAGLVNLIDSAPQHNGPAVFKSLLYEACGRIANPTFGSVGLFWTGEW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallkee 100
                            +q++++++l++++
  Glyma.08G261900.1.p  94 AQCQAAVDAVLAGSQ 108
                          ********9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6143109IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKLSCNGCRI LRKGCGEDCA IRPCLEWINT PQAQANATLF LAKFYGRAGL VNLIDSAPQH  60
NGPAVFKSLL YEACGRIANP TFGSVGLFWT GEWAQCQAAV DAVLAGSQIK VVGASDSQGI  120
ATHGDEHVAQ ILGIRHVSKD AEMDHVKGRA KKIKRSRTVI KPKPQVSSID SAAMLKLTWS  180
REPGRSEGDS EETVEAMLVS QNKPSRNGGV EMDLDLTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G261900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340934.11e-163LBD domain-containing transcription factor
RefseqXP_028223153.11e-163LOB domain-containing protein 41-like
TrEMBLA0A445EYC81e-162A0A445EYC8_GLYSO; LOB domain-containing protein 41
TrEMBLK7L8Z21e-162K7L8Z2_SOYBN; Uncharacterized protein
STRINGGLYMA08G31143.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-65LOB domain-containing protein 41