PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G247300.1.p
Common NameGLYMA_08G247300, LOC100807091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 356aa    MW: 39391.2 Da    PI: 8.6881
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G247300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.5e-3252169289
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssa 82 
                           g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++         s++++++   s+
  Glyma.08G247300.1.p  52 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSvnnftlgypSAVTSNEATTSN 141
                          689*************************************************************66666543333322222222222222 PP

                  TCP  83 snsssg.....................k 89 
                          s+++++                     k
  Glyma.08G247300.1.p 142 SQPNEQllninrsiqwedsnhnstwklK 169
                          2222223334344444432222222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-2954184IPR005333Transcription factor, TCP
PROSITE profilePS5136931.33754112IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MIKSQKEADF QLKQEGLSQS INDPEKAKAT SSSVAQWPRL KDPRIVRVSR AFGGKDRHSK  60
VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLNAAKHEID ELPPLPIIPS  120
VNNFTLGYPS AVTSNEATTS NSQPNEQLLN INRSIQWEDS NHNSTWKLKA KEVSGEMVST  180
DKPNWISRSQ EDKQGSNNQG PSTHVIPNIN LLPRANLNHP SFLGLLNTMP HGYRWEHSAG  240
DVSHPLGNNE LSNLTDIHNN INVVPFPTSS LSLSTGNSQI MLCPPGATQP YFPSHVTAMD  300
MDPRQINHYQ MLSSGSENPL ANSLNHSFSL AMMAHKPLLS PNSSKSPSHK DQDFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1859113155Putative transcription factor PCF6
5zkt_B5e-1859113155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.622760.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G247300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530446.10.0transcription factor TCP13
RefseqXP_014634720.10.0transcription factor TCP13
TrEMBLK7L8P50.0K7L8P5_SOYBN; Uncharacterized protein
STRINGGLYMA08G27155.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-41plastid transcription factor 1