PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G239500.1.p
Common NameGLYMA_08G239500, LOC100527723
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 158aa    MW: 17852.2 Da    PI: 6.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G239500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1293138655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k Lq
  Glyma.08G239500.1.p  93 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKFLQ 138
                          689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.58387137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1790154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-1191142No hitNo description
SMARTSM003539.7E-1393143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-993138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16100155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MQPTSGGGGL ARFRSAPASW LESVLLKEEE EEEDPLSFTQ LLSTIDDAPS HSQHQLYGAA  60
LSNKDKTPEI FMLEDSVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKQ  120
TNTADMLDEA VAYVKFLQKQ IEELSEHQRR CKCVVQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.232950.0cotyledon| flower| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925900.0BT092590.1 Soybean clone JCVI-FLGm-11E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236464.11e-115uncharacterized protein LOC100527723
SwissprotQ9C8P82e-49BH080_ARATH; Transcription factor bHLH80
TrEMBLC6T5781e-115C6T578_SOYBN; Uncharacterized protein
STRINGGLYMA08G26110.11e-114(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-40bHLH family protein