PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G220800.1.p
Common NameGLYMA_08G220800, LOC100819898
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 314aa    MW: 35882.6 Da    PI: 8.1762
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G220800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.2e-1650109155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g
  Glyma.08G220800.1.p  50 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqsKKgRQVYLGAYDDEEAAARAYDLAALKYWG 109
                          57*******************999977777557*************************98 PP

2AP252.89.7e-17152203155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Glyma.08G220800.1.p 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 203
                          89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1250109IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-1750119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-1751118IPR001471AP2/ERF domain
SMARTSM003801.9E-2851123IPR001471AP2/ERF domain
PROSITE profilePS5103220.58751117IPR001471AP2/ERF domain
PRINTSPR003673.3E-65263IPR001471AP2/ERF domain
CDDcd000184.25E-15152213No hitNo description
PfamPF008472.8E-12152203IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18152213IPR016177DNA-binding domain
PROSITE profilePS5103218.268153211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17153212IPR001471AP2/ERF domain
SMARTSM003803.2E-24153217IPR001471AP2/ERF domain
PRINTSPR003673.3E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRVQCSGPLS FLIFMAKKSQ KSLKNNNNNN TTRKRTRKSV PRDSPPQRSS IYRGVTRHRW  60
TGRYEAHLWD KNCWNESQSK KGRQVYLGAY DDEEAAARAY DLAALKYWGQ DTILNFPLSN  120
YEEKLKEMEG QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA AAAYDMAAIE YRGLNAVTNF DLSRYINWPR PKTEENHQNT PSNQNVNSNA  240
ELELGSASDE ITEEGVARSS ESESNPSRRT FPEDIQTIFE NNQDSGIYIE NDDIIFGDLG  300
SFGAPIFHFE LDV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G220800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530350.20.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028245553.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-122AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A445JIE30.0A0A445JIE3_GLYSO; AP2-like ethylene-responsive transcription factor isoform A
TrEMBLK7L8400.0K7L840_SOYBN; Uncharacterized protein
STRINGGLYMA08G23630.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-103ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]