PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G181100.1.p
Common NameGLYMA_08G181100, LOC100793989
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 191aa    MW: 21917.4 Da    PI: 4.9335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G181100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.75.6e-3781281128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF Ptdeelvv++L++k++  +++  ++i+++++y ++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg ++
  Glyma.08G181100.1.p   8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DAIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEE 88 
                          79*************************999.89**************977778899******984........58*************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                          +v+s+ +++ vg+kk +vf+ g+ap+ g kt+W+m+eyrl
  Glyma.08G181100.1.p  89 PVVSStSNKRVGMKKYFVFHVGEAPTaGIKTNWIMQEYRL 128
                          ***9867778**********998875378*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-485158IPR003441NAC domain
PROSITE profilePS5100546.2258159IPR003441NAC domain
PfamPF023652.7E-239128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDAI PDLEVYPYDP WELDGRALAE  60
GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSSTSNKRVG MKKYFVFHVG EAPTAGIKTN  120
WIMQEYRLSD SASSTRSSKR KPQPKIEYNK WVICRVYERN GDDDNGTELS CLDEVFLSLD  180
DDLDEISLPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-40416016169NAC domain-containing protein 19
3swm_B1e-40416016169NAC domain-containing protein 19
3swm_C1e-40416016169NAC domain-containing protein 19
3swm_D1e-40416016169NAC domain-containing protein 19
3swp_A1e-40416016169NAC domain-containing protein 19
3swp_B1e-40416016169NAC domain-containing protein 19
3swp_C1e-40416016169NAC domain-containing protein 19
3swp_D1e-40416016169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.388400.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G181100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619180.0EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531559.11e-142NAC domain-containing protein 104
RefseqXP_028247202.11e-142NAC domain-containing protein 104-like
SwissprotQ8GWK62e-82NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A445JGF81e-140A0A445JGF8_GLYSO; NAC domain-containing protein 104
TrEMBLI1KUF31e-140I1KUF3_SOYBN; Uncharacterized protein
STRINGGLYMA08G19300.11e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-76xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]