PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G137600.1.p
Common NameGLYMA_08G137600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 313aa    MW: 35216.3 Da    PI: 4.9036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G137600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-21120170256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Glyma.08G137600.1.p 120 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 170
                          59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-35119179No hitNo description
PROSITE profilePS5103223.235120177IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-24120178IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-32120178IPR001471AP2/ERF domain
SMARTSM003801.5E-39120183IPR001471AP2/ERF domain
PfamPF008479.7E-15121170IPR001471AP2/ERF domain
PRINTSPR003672.8E-11121132IPR001471AP2/ERF domain
PRINTSPR003672.8E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGTAIDMYNS SNIVADFLDP YSEELMKALK PFMKSDYFSA SSSSSLESQP CSFSSNSLPT  60
SYPSSNQIKL NQLTPDQIVQ IQAQIHIQQQ QQHVAQTQTH LGPKRVPMKH AGTAAKPTKL  120
YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF DTAEEAALAY DNAAFKLRGE FARLNFPHLR  180
HHGAFVFGEF GDYKPLPSSV DSKLQAICES LAKQEEKPCC SVEDVKPVIH AAELAEVESD  240
VAKSNAEYVY PEFEDFKVEH ENPMFSGESS SPESSVTFLD FSDFSDSNNQ WDEMENFGLE  300
KFPSVEIDWE AI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22119177160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.88960.0cotyledon| hypocotyl| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. GmDREB2A;2 was highly induced not only by dehydration and heat but also by low temperature. GmDREB2A;2 exhibited a high transactivation activity, and is posttranslationally regulated.
    [PMID: 23151346]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G137600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2966510.0AY296651.1 Glycine max DREB2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345278.10.0ethylene-responsive transcription factor
RefseqXP_028243789.10.0ethylene-responsive transcription factor ERF060-like
SwissprotO656652e-80ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A445JEC50.0A0A445JEC5_GLYSO; Ethylene-responsive transcription factor ERF060
TrEMBLQ4QYE10.0Q4QYE1_SOYBN; DREB2
STRINGGLYMA08G14600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-60ERF family protein
Publications ? help Back to Top
  1. Li XP, et al.
    Soybean DRE-binding transcription factors that are responsive to abiotic stresses.
    Theor. Appl. Genet., 2005. 110(8): p. 1355-62
    [PMID:15841365]
  2. Mizoi J, et al.
    GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression.
    Plant Physiol., 2013. 161(1): p. 346-61
    [PMID:23151346]