PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G243000.1.p
Common NameGLYMA_07G243000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 159aa    MW: 16789.1 Da    PI: 10.0945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G243000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.16.6e-103958120
                 GATA  1 CsnCgttkTplWRrgpdgnk 20
                         C+ CgttkTplWR gp g+k
  Glyma.07G243000.1.p 39 CADCGTTKTPLWRGGPAGPK 58
                         ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-433111IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.5783356IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-53357No hitNo description
Gene3DG3DSA:3.30.50.102.1E-73758IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.61E-838101No hitNo description
PfamPF003202.3E-73958IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVDPTGKGSE IEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKVS  60
SPSISQIAPR GVKPTLDLTL CYPFFQSLCN ACGIRSRKKK RAILGINKGS NEDGRKGKRT  120
GGALGKEVLL HRSHWKKLGE EEKAAVLLMS LSYGSVYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.90991e-122flower| hypocotyl| pod| root| stem| vegetative bud
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO68479911e-122
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G243000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-131AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235841.11e-74uncharacterized protein LOC100527933
RefseqXP_028241630.11e-74GATA transcription factor 15-like
SwissprotQ9FJ101e-26GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A445K1E51e-111A0A445K1E5_GLYSO; GATA transcription factor 16 isoform A
TrEMBLI1KMU41e-111I1KMU4_SOYBN; Uncharacterized protein
STRINGGLYMA07G37190.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.19e-28GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]