PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G234200.2.p
Common NameGLYMA_07G234200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 1003aa    MW: 110762 Da    PI: 7.683
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G234200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.4e-40161238178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqv++C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Glyma.07G234200.2.p 161 VCQVQDCRADLSNAKDYHRRHKVCDVHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 238
                          6**************************************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.0E-32156223IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.966159236IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-37160241IPR004333Transcription factor, SBP-box
PfamPF031107.4E-29162235IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.201.7E-6278302IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.36E-6767887IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-6774885IPR020683Ankyrin repeat-containing domain
CDDcd002046.10E-7774884No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MEAEFGGKNQ YLYGPVVSGM KKAVVGNGKR SLEWDLNDWR WDGDLFTAQP LNSVPSDCRG  60
CQFFPPHPEI PAKNANPSTT NLSSSVFILG EGKRELEKRR RDVIAEGEGE GLNDEGGSLS  120
LNLGGQGYPL MLEEEEKSGK KTKVIGTNTT TTTTTTSNRA VCQVQDCRAD LSNAKDYHRR  180
HKVCDVHSKA TMALVGNVMQ RFCQQCSRFH VLQEFDEGKR SCRRRLAGHN RRRRKTHPDV  240
SVVNEGSLND QRDSNYLLMS LLRILTNLHS NGSDHTRNQD ILSHLLKNLA SLAGPNNGGR  300
LAPLLEESKG LVNAGTHGAD HDKPNLNSNA PEASRPSSSI KTDNGIIAQD PPMSVVQYET  360
PANGMTQKCI ASGDGVGNLK PPSGPLLSNN TVENHKKPYP PVASGMGFID HASWLQCDSL  420
KSSPPQTSRN SDSTSTQSPS SSSGEAQSRT DRIVFKLFGK DPSDFPLLLR SQILNWLSRS  480
PTEIESYIRP GCIILTIYLR LEKSAWEELY CNLGSSLRKL LAASNDSFWR TGWVYARVQH  540
AVAFLYNGQV VLDVPLRLKS PQHCMISCIN PLAVPASASA QFIVKGFNLS QSSTRLHCAL  600
EGKYLVHASC HDLIGGADAP IQHLSFSCQI PSVTGRGFIE VEDHGLSSCS FPFIVAEQEV  660
CSEICKLENV IEEAETTDDI QIKNQHMEEK TQALDFLQEM GWLLHRSHVK FKLGSMAPFH  720
DLFQFNRFAW LVDFSMDHGW CAVMKKLLDI IFEGGVDAGE HASIELALLN MGLLHRAVKR  780
NCRPMVELLL RFVPVKTSDG ADSEMKQVAE APDRFLFRPD TVGPAGLTPL HVAASMSGSE  840
NVLDALTNDP RMVGIEAWKS ARDSTGLTPN DHACLRGYYS YIQLVQNKTN KKGERQHLVD  900
IPGTVVDSNT TQKQSDGNRT CRVPSLKTEK IETTAMPRQC RACQQKVAYG GMKTAMVYRP  960
VMLSMVTIAV VCVCVALLFK SSPRVYYVFQ PFNWESLEYG AM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30153235284squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.274390.0flower| meristem| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G234200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528599.10.0squamosa promoter-binding-like protein 1
TrEMBLA0A0R0JFS40.0A0A0R0JFS4_SOYBN; Uncharacterized protein
STRINGGLYMA07G36180.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1