PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G170500.1.p
Common NameGLYMA_07G170500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 363aa    MW: 40529.9 Da    PI: 9.7175
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G170500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-052343323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ Cgk F r  nL+ H r H
  Glyma.07G170500.1.p 23 CETCGKGFQRDQNLQLHRRGH 43
                         *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.77E-51944No hitNo description
Gene3DG3DSA:3.30.160.606.1E-52143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5932143IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDIVAQVIAL SPKTLMATNR FLCETCGKGF QRDQNLQLHR RGHNLPWKLK QRTGKEARKR  60
VYVCPEKSCV HHDPSRALGD LTGIKKHFCR KHDEKKWKCE KCLKRYAVYR RDSFITHRAF  120
CDALAEETAR LNTASDINTF LGGNIGYNIM GTSLGPNMAT HFPSIFKPVS STNEISNQTS  180
WGLPLWMDSS TWFCHKLIRN NVFGTKISNS SNNQELTTST TTTTSLPIGN TSVPSLYFSQ  240
HQPQQTCSSA NMSATTLLQK AAQIGATLSD PSWLGNLGLK CGNNQGHHGN NNKYSGMYRS  300
SLVLTTLGSE ADNSACELSQ MHPHKRRHVL NEERREGQAR DFLGIGVQNH LPHFINQGVD  360
LI*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}.
UniprotTISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G170500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352960.0AC235296.1 Glycine max strain Williams 82 clone GM_WBb0059O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028238076.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9FFH32e-92IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLK7L2980.0K7L298_SOYBN; Uncharacterized protein
STRINGGLYMA07G26516.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-90C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]